Imagej Download Command Line. To install and run imagej download imagej bundled with either 32 bit or 64 bit java extract the imagej directory from the zip archive change to the imagej directory and double click the imagej launcher. If the imagej window is too small set gui scale in the edit options appearance dialog to.
4 1 launching alternative user interfaces. The zip file you download image1 xx zip should automatically expand to image app which is normally copied into the applications folder. Gunzip ij123 x86 tar gz tar xvf ij123 x86 tar cd imagej run this installation includes ibm s java runtime environment 1 1 8 and the complete imagej source code in the src zip.
In imagej i use.
4 1 launching alternative user interfaces. Since fiji is just imagej i do not see why the same command line should not work. For both fiji and imagej type the name of the command you are searching for in the search box and imagej will list all of the commands with similar names. If the imagej window is too small set gui scale in the edit options appearance dialog to.